nosoiSim object | table.hosts | table.state | Epidemiological insights | Epidemiological summary | Epidemiological dynamics | $R_0$ | Transmission chains | Full transmission chain | Sampling the transmission chain | Exporting the Transmission Tree

Introduction | Critical assumption of nosoi | Essential building blocks: 3 probabilities and 2 numbers | What happens at each time step? | Setting up the core functions | Expected output | Functions' arguments | t | prestime | current.in and current.env.value | host.count | Extra Parameters | Combining arguments | Going further

Structure of the population | Continuous space | Movement kernel | Setting up the simulation | General parameters | Core functions | pExit, param.pExit, timeDep.pExit, diff.pExit and hostCount.pExit | pMove, param.pMove, timeDep.pMove, diff.pMove and hostCount.pMove | sdMove, param.sdMove, timeDep.sdMove, diff.sdMove and hostCount.sdMove | nContact, param.nContact, timeDep.nContact, diff.nContact and hostCount.nContact | pTrans, param.pTrans, timeDep.pTrans,diff.pTrans and hostCount.pTrans | Miscellaneous | Dual host | Running nosoi | Single host | pExit | pMove | sdMove | nContact | pTrans | Running | pExit.B | pMove.B | sdMove.B | nContact.B | pTrans.B | Going further

Structure of the population | Setting up the simulation | General parameters | Core functions | pExit, param.pExit, timeDep.pExit, diff.pExit and hostCount.pExit | pMove, param.pMove, timeDep.pMove, diff.pMove and hostCount.pMove | nContact, param.nContact, timeDep.nContact, diff.nContact and hostCount.nContact | pTrans, param.pTrans, timeDep.pTrans,diff.pTrans and hostCount.pTrans | Miscellaneous | Dual host | Running nosoi | Single host | pExit | pMove | nContact | pTrans | Running | pExit.B | pMove.B | nContact.B | pTrans.B | Going further

Setting up the simulation | General parameters | Core functions | pExit, param.pExit and timeDep.pExit | nContact, param.nContact and timeDep.nContact | pTrans, param.pTrans and timeDep.pTrans | Miscellaneous | Dual host | Running nosoi | Single host | pExit | nContact | pTrans | Running | pExit.B | nContact.B | pTrans.B | Going further